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Bra005033 protein (Brassica rapa) - STRING interaction network
"Bra005033" - AT2G39510 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005033AT2G39510 (E=2e-189) | nodulin MtN21 family protein (375 aa)    
Predicted Functional Partners:
Bra038410
AT1G31120 (E=0.0) KUP10 | KUP10; potassium ion transmembrane transporter ; Potassium transporter (793 aa)
           
  0.426
Bra001306
AT3G09500 (E=1e-059) | 60S ribosomal protein L35 (RPL35A) (123 aa)
           
  0.426
Bra032654
AT1G01910 (E=3e-184) | anion-transporting ATPase, putative ; ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane prote [...] (352 aa)
           
  0.426
Bra029771.1-P
AT3G09500 (E=1e-059) | 60S ribosomal protein L35 (RPL35A) (123 aa)
           
  0.426
Bra029309
AT5G61780 (E=0.0) | tudor domain-containing protein / nuclease family protein (1322 aa)
           
  0.426
Bra028701
AT5G07350 (E=0.0) | tudor domain-containing protein / nuclease family protein (988 aa)
           
  0.426
Bra017956
AT1G21880 (E=3e-182) LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) (414 aa)
           
  0.426
Bra016402
AT1G21880 (E=5e-191) LYM1 | LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) (415 aa)
           
  0.426
Bra009577
AT5G02610 (E=1e-058) | 60S ribosomal protein L35 (RPL35D) (123 aa)
           
  0.426
Bra005933
AT5G07350 (E=0.0) | tudor domain-containing protein / nuclease family protein (991 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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