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Bra005037 protein (Brassica rapa) - STRING interaction network
"Bra005037" - AT2G39470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005037AT2G39470 (E=3e-116) PPL2 | PPL2 (PsbP-like protein 2); calcium ion binding (237 aa)    
Predicted Functional Partners:
Bra015520
AT1G06680 (E=2e-119) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
 
  0.748
Bra018294
AT1G06680 (E=5e-122) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
 
  0.729
Bra031534
AT1G06680 (E=1e-120) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
   
 
  0.719
Bra016189
AT1G70760 (E=5e-088) CRR23 | CRR23 ((chlororespiratory reduction 23) (195 aa)
     
   
  0.631
Bra007941
AT1G70760 (E=2e-090) CRR23 | CRR23 ((chlororespiratory reduction 23) (192 aa)
     
   
  0.631
Bra030660
AT1G06680 (E=3e-113) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (261 aa)
   
 
  0.620
Bra021327
AT1G54780 (E=3e-122) | thylakoid lumen 18.3 kDa protein (284 aa)
   
   
  0.591
Bra026087
AT1G15980 (E=1e-221) NDF1 | NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) (459 aa)
     
   
  0.566
Bra038081
AT4G15510 (E=4e-105) | photosystem II reaction center PsbP family protein (267 aa)
   
        0.554
Bra039542
AT4G15510 (E=2e-100) | photosystem II reaction center PsbP family protein (269 aa)
   
        0.553
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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