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Bra005039 protein (Brassica rapa) - STRING interaction network
"Bra005039" - AT2G39450 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005039AT2G39450 (E=1e-090) MTP11, ATMTP11 | MTP11; cation transmembrane transporter/ manganese ion transmembrane transporter/ manganese-hydrogen antiporter (364 aa)    
Predicted Functional Partners:
Bra028938
AT5G56290 (E=0.0) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (730 aa)
       
      0.612
Bra002826
AT5G56290 (E=6e-213) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding (762 aa)
       
      0.612
Bra011454
AT4G33580 (E=2e-127) ATBCA5, BCA5 | carbonic anhydrase family protein / carbonate dehydratase family protein (634 aa)
         
  0.560
Bra000603
AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)
              0.551
Bra034779
AT3G12100 (E=1e-198) | cation efflux family protein / metal tolerance protein, putative (390 aa)
   
   
  0.500
Bra025618
AT2G04620 (E=3e-223) | cation efflux family protein (765 aa)
   
   
  0.500
Bra021036
AT2G32270 (E=4e-030) ZIP3 | ZIP3; zinc ion transmembrane transporter (474 aa)
         
  0.486
Bra038417
AT1G31260 (E=5e-081) ZIP10 | ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (215 aa)
           
  0.463
Bra038416
AT1G31260 (E=3e-068) ZIP10 | ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (154 aa)
           
  0.463
Bra036826
AT5G62160 (E=4e-031) AtZIP12 | AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter (290 aa)
           
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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