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Bra005050.1-P protein (Brassica rapa) - STRING interaction network
"Bra005050.1-P" - AT2G39340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005050.1-PAT2G39340 (E=0.0) | SAC3/GANP family protein (993 aa)    
Predicted Functional Partners:
Bra040682
AT2G19560 (E=1e-215) EER5 | EER5 (ENHANCED ETHYLENE RESPONSE 5) (413 aa)
       
 
  0.932
Bra008508
AT5G45010 (E=6e-011) ATDSS1(V) | ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) (75 aa)
       
      0.616
Bra004106
AT1G64750 (E=5e-007) ATDSS1(I) | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) (71 aa)
       
      0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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