STRINGSTRING
Bra005056 protein (Brassica rapa) - STRING interaction network
"Bra005056" - AT5G25070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005056AT5G25070 (E=2e-220) | unknown protein (720 aa)    
Predicted Functional Partners:
Bra015073
AT3G25530 (E=3e-140) GHBDH, ATGHBDH, GLYR1, GR1 | GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) (289 aa)
           
  0.544
Bra032366
AT1G30230 (E=2e-092) | elongation factor 1-beta / EF-1-beta (252 aa)
           
  0.506
Bra010787
AT1G30230 (E=3e-091) | elongation factor 1-beta / EF-1-beta (234 aa)
           
  0.506
Bra025958
AT1G17650 (E=8e-179) GLYR2, GR2 | GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating) (343 aa)
           
  0.501
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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