STRINGSTRING
Bra005058 protein (Brassica rapa) - STRING interaction network
"Bra005058" - AT2G39220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005058AT2G39220 (E=3e-239) PLP6, PLA IIB | PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir ; Lipolytic acyl hydrolase (LAH) (487 aa)    
Predicted Functional Partners:
Bra031998
AT3G03305 (E=0.0) | calcineurin-like phosphoesterase family protein (1200 aa)
         
  0.741
Bra032533
AT1G04010 (E=0.0) | phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase (641 aa)
         
  0.732
Bra030052
AT1G27480 (E=4e-203) | lecithin-cholesterol acyltransferase family protein / LACT family protein (430 aa)
         
  0.732
Bra023426
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (597 aa)
         
  0.732
Bra015285
AT1G04010 (E=0.0) | phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase (641 aa)
         
  0.732
Bra013430
AT4G19860 (E=4e-288) | lecithin-cholesterol acyltransferase family protein / LACT family protein (533 aa)
         
  0.732
Bra012531
AT4G19860 (E=3e-264) | lecithin-cholesterol acyltransferase family protein / LACT family protein (536 aa)
         
  0.732
Bra008812
AT5G13640 (E=0.0) ATPDAT, PDAT | ATPDAT; phosphatidylcholine-sterol O-acyltransferase (666 aa)
         
  0.732
Bra038501
AT4G16700 (E=4e-184) PSD1 | PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase (445 aa)
         
  0.647
Bra013506
AT4G16700 (E=1e-016) PSD1 | PSD1 (phosphatidylserine decarboxylase 1); phosphatidylserine decarboxylase (207 aa)
         
  0.647
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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