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Bra005060 protein (Brassica rapa) - STRING interaction network
"Bra005060" - AT2G39140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005060AT2G39140 (E=7e-147) SVR1 | SVR1 (SUPPRESSOR OF VARIEGATION 1); RNA binding / pseudouridine synthase (398 aa)    
Predicted Functional Partners:
Bra034781
AT3G12080 (E=4e-299) emb2738 | emb2738 (embryo defective 2738); GTP binding (657 aa)
 
   
  0.615
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
 
   
  0.612
Bra025629
AT5G39960 (E=3e-258) | GTP-binding family protein (629 aa)
 
   
  0.600
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
   
   
  0.593
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
   
        0.568
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
   
        0.568
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
   
        0.567
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
   
        0.567
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
   
        0.567
Bra041099
Uncharacterized protein (698 aa)
         
  0.557
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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