STRINGSTRING
Bra005070 protein (Brassica rapa) - STRING interaction network
"Bra005070" - AT2G38940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005070AT2G38940 (E=8e-262) ATPT2, PHT1;4 | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2); carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugar-hydrogen symporter (534 aa)    
Predicted Functional Partners:
Bra034242
AT3G26570 (E=8e-270) PHT2;1, ORF02 | PHT2;1 (PHOSPHATE TRANSPORTER 2;1); low affinity phosphate transmembrane transporter ; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport (573 aa)
       
 
  0.565
Bra025212
AT3G26570 (E=2e-276) PHT2;1, ORF02 | PHT2;1 (PHOSPHATE TRANSPORTER 2;1); low affinity phosphate transmembrane transporter ; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport (585 aa)
       
 
  0.565
Bra035111
AT1G16390 (E=3e-188) ATOCT3 | ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar-hydrogen symporter (517 aa)
   
   
  0.527
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
 
  0.515
Bra040301
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (931 aa)
           
  0.503
Bra014033
AT1G44900 (E=0.0) MCM2 | ATP binding / DNA binding / DNA-dependent ATPase (927 aa)
           
  0.503
Bra036296
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (711 aa)
           
  0.501
Bra033756
AT5G44635 (E=0.0) MCM6 | minichromosome maintenance family protein / MCM family protein (825 aa)
           
  0.501
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
           
  0.501
Bra022027
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (776 aa)
           
  0.501
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]