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Bra005087 protein (Brassica rapa) - STRING interaction network
"Bra005087" - AT2G26900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005087AT2G26900 (E=2e-178) | bile acid-sodium symporter family protein (409 aa)    
Predicted Functional Partners:
Bra022427
AT3G19490 (E=2e-244) ATNHD1, NHD1 | ATNHD1; potassium-hydrogen antiporter/ sodium-hydrogen antiporter (578 aa)
     
   
  0.478
Bra001746
AT3G19490 (E=1e-228) ATNHD1, NHD1 | ATNHD1; potassium-hydrogen antiporter/ sodium-hydrogen antiporter (575 aa)
     
   
  0.448
Bra037457
AT5G48840 (E=1e-135) PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization (317 aa)
              0.437
Bra008876
AT5G12860 (E=8e-164) DiT1 | DiT1 (dicarboxylate transporter 1); oxoglutarate-malate antiporter (297 aa)
     
   
  0.406
Bra027641
AT1G63440 (E=0.0) HMA5 | HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (1192 aa)
         
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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