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Bra005088 protein (Brassica rapa) - STRING interaction network
"Bra005088" - AT2G38730 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
Databases
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[Homology]
Score
Bra005088AT2G38730 (E=3e-105) | peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (204 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.991
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
         
0.893
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
         
  0.867
Bra015687
AT1G77180 (E=2e-227) | chromatin protein family (610 aa)
     
  0.855
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
  0.852
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
  0.852
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
     
  0.848
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
     
  0.848
Bra005086
AT2G38770 (E=0.0) EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765) (1501 aa)
     
  0.844
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
     
  0.841
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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