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Bra005096 protein (Brassica rapa) - STRING interaction network
"Bra005096" - AT3G52850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005096AT3G52850 (E=7e-312) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding (620 aa)    
Predicted Functional Partners:
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
       
 
  0.527
Bra041108
AT1G26670 (E=8e-049) VTI12, ATVTI12, VTI1B | VTI1B; SNARE binding / receptor/ soluble NSF attachment protein (250 aa)
       
 
  0.483
Bra040987
AT5G39510 (E=2e-094) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor (221 aa)
       
 
  0.483
Bra036218
AT5G39510 (E=5e-097) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor (221 aa)
       
 
  0.483
Bra025661
AT3G29100 (E=7e-015) VTI13, ATVTI13 | VTI13; SNARE binding / receptor (92 aa)
       
 
  0.483
Bra012446
AT1G26670 (E=2e-099) VTI12, ATVTI12, VTI1B | VTI1B; SNARE binding / receptor/ soluble NSF attachment protein (222 aa)
       
 
  0.483
Bra019514
AT3G47810 (E=8e-103) MAG1, VPS29, ATVPS29 | MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase (190 aa)
           
  0.463
Bra018110
AT3G47810 (E=5e-103) MAG1, VPS29, ATVPS29 | MAG1 (MAIGO 1); hydrolase/ protein serine/threonine phosphatase (190 aa)
           
  0.463
Bra036818
AT3G51310 (E=0.0) VPS35C | VPS35C (VPS35 HOMOLOG C) ; Plays a role in vesicular protein sorting (793 aa)
     
   
  0.413
Bra015806
AT1G75850 (E=6e-248) VPS35B | VPS35B (VPS35 HOMOLOG B) ; Plays a role in vesicular protein sorting (807 aa)
     
   
  0.413
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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