STRINGSTRING
Bra005097 protein (Brassica rapa) - STRING interaction network
"Bra005097" - AT2G38550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005097AT2G38550 (E=5e-114) | unknown protein (336 aa)    
Predicted Functional Partners:
Bra019447
AT3G43520 (E=5e-039) | unknown protein (219 aa)
           
  0.581
Bra027988
AT1G33265 (E=2e-019) | unknown protein (119 aa)
           
  0.543
Bra027527
AT5G44090 (E=7e-287) | calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B’’ regulatory subunit, putative (533 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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