STRINGSTRING
Bra005098 protein (Brassica rapa) - STRING interaction network
"Bra005098" - AT2G38540 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005098AT2G38540 (E=1e-039) LP1, LTP1, ATLTP1 | LP1; calmodulin binding ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (134 aa)    
Predicted Functional Partners:
Bra012848
AT3G51590 (E=4e-052) LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (119 aa)
       
   
0.722
Bra038235
AT3G19850 (E=2e-237) | phototropic-responsive NPH3 family protein (563 aa)
           
  0.468
Bra038040
AT4G16150 (E=0.0) | calmodulin binding / transcription regulator (919 aa)
           
  0.468
Bra034736
AT3G12740 (E=2e-168) ALIS1 | ALIS1 (ALA-INTERACTING SUBUNIT 1); phospholipid transporter (343 aa)
           
  0.468
Bra031632
AT1G08570 (E=2e-096) ACHT4 | ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (261 aa)
           
  0.468
Bra030808
AT1G54320 (E=1e-170) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (361 aa)
           
  0.468
Bra022188
AT3G16940 (E=0.0) | calmodulin-binding protein (850 aa)
           
  0.468
Bra018614
AT1G08570 (E=1e-109) ACHT4 | ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (271 aa)
           
  0.468
Bra014244
AT1G50280 (E=1e-212) | phototropic-responsive NPH3 family protein (527 aa)
           
  0.468
Bra009491
AT5G04040 (E=0.0) SDP1 | SDP1 (SUGAR-DEPENDENT1); triacylglycerol lipase (1425 aa)
           
  0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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