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Bra005106 protein (Brassica rapa) - STRING interaction network
"Bra005106" - AT2G38460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005106AT2G38460 (E=1e-241) ATIREG1 | ATIREG1 (IRON-REGULATED PROTEIN 1); transporter (547 aa)    
Predicted Functional Partners:
Bra011721
AT4G37170 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (1186 aa)
       
  0.613
Bra013419
AT4G19690 (E=2e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
       
 
  0.533
Bra012534
AT4G19690 (E=5e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
       
 
  0.533
Bra032640
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (725 aa)
     
   
  0.516
Bra001283
AT3G08040 (E=3e-196) FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFECTIVE 3); antiporter/ transporter (529 aa)
           
  0.501
Bra040902
AT5G21100 (E=3e-271) | L-ascorbate oxidase, putative (572 aa)
       
  0.477
Bra039389
AT3G13400 (E=2e-287) sks13 | sks13 (SKU5 Similar 13); copper ion binding / oxidoreductase (520 aa)
       
  0.477
Bra039388
AT3G13390 (E=5e-296) sks11 | sks11 (SKU5 Similar 11); copper ion binding / oxidoreductase (554 aa)
       
  0.477
Bra039274
AT2G46570 (E=1e-304) LAC6 | LAC6 (laccase 6); laccase ; Lignin degradation and detoxification of lignin-derived products (569 aa)
       
  0.477
Bra038001
AT1G55570 (E=2e-302) sks12 | sks12 (SKU5 Similar 12); copper ion binding / oxidoreductase (555 aa)
       
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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