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Bra005107 protein (Brassica rapa) - STRING interaction network
"Bra005107" - AT2G38440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005107AT2G38440 (E=0.0) ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR2 (SCAR HOMOLOG 2) (1428 aa)    
Predicted Functional Partners:
Bra030221
AT2G22640 (E=5e-029) HSPC300, BRK1 | BRK1 (BRICK1) (86 aa)
       
 
  0.948
Bra032763
AT4G14147 (E=3e-057) ARPC4 | ARPC4; protein binding (141 aa)
       
 
  0.698
Bra004555
AT2G46225 (E=2e-134) ABIL1 | ABIL1 (Abi-1-like 1) (303 aa)
       
 
  0.642
Bra006457
AT5G18410 (E=0.0) PIR, KLK, PIR121, SRA1, PIRP | PIR121; transcription activator (1273 aa)
     
   
  0.562
Bra039097
AT3G27000 (E=3e-229) ARP2, ATARP2, WRM | ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton (389 aa)
           
  0.541
Bra024373
AT4G01710 (E=9e-068) CRK, ARPC5 | CRK (CROOKED); actin binding ; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (135 aa)
           
  0.540
Bra038441
AT4G14145 (E=1e-046) | unknown protein (126 aa)
       
 
  0.537
Bra010747
AT4G14145 (E=2e-044) | unknown protein (120 aa)
       
 
  0.537
Bra025045
AT5G45970 (E=4e-101) ARAC2, ROP7, ATRAC2, ATROP7 | ARAC2 (ARABIDOPSIS RAC-LIKE 2); GTP binding (201 aa)
       
 
  0.510
Bra038448
AT4G16340 (E=0.0) SPK1 | SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor (2072 aa)
       
 
  0.508
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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