STRINGSTRING
Bra005117 protein (Brassica rapa) - STRING interaction network
"Bra005117" - AT5G37070 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005117AT5G37070 (E=1e-089) | unknown protein (166 aa)    
Predicted Functional Partners:
Bra014777
AT3G55070 (E=5e-196) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (414 aa)
           
  0.483
Bra007137
AT3G55070 (E=3e-195) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (415 aa)
           
  0.483
Bra038653
AT5G08560 (E=3e-091) | transducin family protein / WD-40 repeat family protein (479 aa)
           
  0.418
Bra029733
AT3G08943 (E=0.0) | binding / protein transporter (872 aa)
           
  0.418
Bra029207
AT5G08560 (E=2e-038) | transducin family protein / WD-40 repeat family protein (272 aa)
           
  0.418
Bra027514
AT5G43920 (E=1e-254) | transducin family protein / WD-40 repeat family protein (1112 aa)
           
  0.418
Bra009351
AT5G08560 (E=2e-272) | transducin family protein / WD-40 repeat family protein (580 aa)
           
  0.418
Bra006004
AT5G08560 (E=2e-199) | transducin family protein / WD-40 repeat family protein (371 aa)
           
  0.418
Bra003054
AT5G53480 (E=0.0) | importin beta-2, putative (868 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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