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Bra005134 protein (Brassica rapa) - STRING interaction network
"Bra005134" - AT2G38140 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005134AT2G38140 (E=2e-030) PSRP4 | PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome (119 aa)    
Predicted Functional Partners:
Bra040916
AT1G64510 (E=6e-063) | ribosomal protein S6 family protein (208 aa)
     
   
  0.747
Bra027704
AT1G64510 (E=8e-075) | ribosomal protein S6 family protein (208 aa)
     
   
  0.747
Bra040773
AT1G29070 (E=3e-048) | ribosomal protein L34 family protein (165 aa)
     
        0.676
Bra010852
AT1G29070 (E=5e-044) | ribosomal protein L34 family protein (161 aa)
     
        0.676
Bra017453
AT1G79850 (E=7e-043) RPS17, CS17, PRPS17 | RPS17 (RIBOSOMAL PROTEIN S17); structural constituent of ribosome (141 aa)
     
   
  0.585
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
     
   
  0.583
Bra035054
AT1G78630 (E=3e-131) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (240 aa)
     
        0.581
Bra008373
AT1G78630 (E=3e-122) emb1473 | emb1473 (embryo defective 1473); structural constituent of ribosome (242 aa)
     
        0.581
Bra014663
AT3G56910 (E=2e-024) PSRP5 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (137 aa)
     
   
  0.566
Bra007282
AT3G56910 (E=1e-025) PSRP5 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (143 aa)
     
   
  0.566
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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