STRINGSTRING
Bra005154 protein (Brassica rapa) - STRING interaction network
"Bra005154" - AT2G37860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005154AT2G37860 (E=4e-167) LCD1 | LCD1 (LOWER CELL DENSITY 1) (423 aa)    
Predicted Functional Partners:
Bra035541
AT5G54870 (E=7e-289) | unknown protein (529 aa)
           
  0.457
Bra026385
AT4G27020 (E=5e-145) | unknown protein (493 aa)
           
  0.457
Bra016231
AT1G70160 (E=8e-290) | unknown protein (526 aa)
           
  0.457
Bra007898
AT1G70160 (E=8e-285) | unknown protein (526 aa)
           
  0.457
Bra027235
AT3G15520 (E=9e-222) | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (468 aa)
           
  0.432
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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