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Bra005169 protein (Brassica rapa) - STRING interaction network
"Bra005169" - AT2G37700 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005169AT2G37700 (E=5e-233) | catalytic/ iron ion binding / oxidoreductase (619 aa)    
Predicted Functional Partners:
Bra000445
AT2G47250 (E=0.0) | RNA helicase, putative (723 aa)
           
  0.542
Bra007671
AT3G62310 (E=0.0) | RNA helicase, putative (718 aa)
           
  0.479
Bra003744
AT3G62310 (E=3e-310) | RNA helicase, putative (670 aa)
           
  0.429
Bra001238
AT2G47250 (E=1e-079) | RNA helicase, putative (264 aa)
           
  0.429
Bra001237
AT3G62310 (E=8e-144) | RNA helicase, putative (432 aa)
           
  0.429
Bra028579
AT5G10540 (E=0.0) | peptidase M3 family protein / thimet oligopeptidase family protein (701 aa)
           
  0.408
Bra006067
AT5G10540 (E=0.0) | peptidase M3 family protein / thimet oligopeptidase family protein (695 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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