STRINGSTRING
Bra005172 protein (Brassica rapa) - STRING interaction network
"Bra005172" - AT2G37678 in Brassica rapa
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Bra005172AT2G37678 (E=1e-055) FHY1, PAT3, FRY1 | FHY1 (FAR-RED ELONGATED HYPOCOTYL 1); transcription regulator (188 aa)    
Predicted Functional Partners:
Bra018903
AT1G51350 (E=0.0) | armadillo/beta-catenin repeat family protein (651 aa)
       
 
  0.921
Bra014271
AT1G51350 (E=7e-101) | armadillo/beta-catenin repeat family protein (377 aa)
       
 
  0.921
Bra014777
AT3G55070 (E=5e-196) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (414 aa)
       
 
  0.865
Bra007137
AT3G55070 (E=3e-195) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (415 aa)
       
 
  0.865
Bra020013
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (1210 aa)
       
 
  0.807
Bra011793
AT4G37880 (E=1e-179) | protein binding / zinc ion binding (381 aa)
     
 
  0.765
Bra010618
AT4G37880 (E=5e-172) | protein binding / zinc ion binding (385 aa)
     
 
  0.765
Bra006028
AT5G09630 (E=5e-090) | protein binding / zinc ion binding (381 aa)
     
 
  0.765
Bra007765
AT1G61150 (E=3e-019) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (74 aa)
       
 
  0.754
Bra038574
AT1G61150 (E=1e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G11110.1); Has 740 Blast hits to 708 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (351 aa)
       
 
  0.754
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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