STRINGSTRING
Bra005176 protein (Brassica rapa) - STRING interaction network
"Bra005176" - AT2G37640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005176AT2G37640 (E=1e-150) ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | EXP3 (263 aa)    
Predicted Functional Partners:
Bra026509
AT3G25730 (E=4e-130) | AP2 domain-containing transcription factor, putative (326 aa)
           
  0.452
Bra038737
AT3G12610 (E=6e-183) DRT100 | DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); nucleotide binding / protein binding (373 aa)
     
   
  0.418
Bra001460
AT3G12610 (E=7e-184) DRT100 | DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); nucleotide binding / protein binding (372 aa)
     
   
  0.418
Bra035741
AT3G20820 (E=2e-189) | leucine-rich repeat family protein (365 aa)
     
   
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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