STRINGSTRING
Bra005182 protein (Brassica rapa) - STRING interaction network
"Bra005182" - AT2G37585 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005182AT2G37585 (E=1e-188) | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (383 aa)    
Predicted Functional Partners:
Bra018639
AT1G08280 (E=7e-142) | glycosyl transferase family 29 protein / sialyltransferase family protein (305 aa)
         
  0.791
Bra013498
AT4G21060 (E=2e-311) | galactosyltransferase family protein (585 aa)
         
  0.776
Bra015892
AT1G74800 (E=0.0) | galactosyltransferase family protein (662 aa)
         
  0.764
Bra022408
AT3G19280 (E=1e-207) FUT11, ATFUT11, FUCT1, FUCTA | FUT11 (FUCOSYLTRANSFERASE 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups (506 aa)
         
  0.723
Bra018801
AT1G49710 (E=3e-238) FUT12, ATFUT12, FUCTB, FUCT2 | FUT12 (FUCOSYLTRANSFERASE 12); fucosyltransferase/ transferase, transferring glycosyl groups (624 aa)
         
  0.723
Bra016092
AT1G71990 (E=2e-197) FUT13, ATFUT13, FUCTC, FT4-M | FUT13 (FUCOSYLTRANSFERASE 13); fucosyltransferase/ transferase, transferring glycosyl groups (400 aa)
         
  0.723
Bra014210
AT1G49710 (E=8e-240) FUT12, ATFUT12, FUCTB, FUCT2 | FUT12 (FUCOSYLTRANSFERASE 12); fucosyltransferase/ transferase, transferring glycosyl groups (505 aa)
         
  0.723
Bra018103
AT5G62620 (E=1e-298) | galactosyltransferase family protein (662 aa)
         
  0.709
Bra024660
AT1G27120 (E=2e-288) | galactosyltransferase family protein (647 aa)
         
  0.699
Bra010102
AT5G62620 (E=2e-271) | galactosyltransferase family protein (488 aa)
         
  0.699
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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