STRINGSTRING
Bra005183 protein (Brassica rapa) - STRING interaction network
"Bra005183" - AT2G37570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005183AT2G37570 (E=9e-251) SLT1 | SLT1 (sodium- and lithium-tolerant 1) (493 aa)    
Predicted Functional Partners:
Bra025927
AT1G18160 (E=0.0) | protein kinase family protein (993 aa)
           
  0.420
Bra015976
AT1G18160 (E=0.0) | protein kinase family protein (962 aa)
           
  0.420
Bra007682
AT3G62470 (E=2e-254) | pentatricopeptide (PPR) repeat-containing protein (606 aa)
           
  0.404
Bra021325
AT1G54850 (E=1e-086) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Heat shock protein Hsp20 (InterPro-IPR002068), HSP20-like chaperone (InterPro-IPR008978); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G54840.1); Has 35 Blast hits to 35 proteins in 7 species- Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (192 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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