STRINGSTRING
Bra005187 protein (Brassica rapa) - STRING interaction network
"Bra005187" - AT3G53710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005187AT3G53710 (E=2e-131) AGD6 | AGD6; ARF GTPase activator/ DNA binding / zinc ion binding (441 aa)    
Predicted Functional Partners:
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
  0.961
Bra022463
AT5G50960 (E=1e-050) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization (282 aa)
     
0.888
Bra039725
AT3G22950 (E=9e-099) ATARFC1 | ATARFC1 (ADP-ribosylation factor C1); GTP binding (183 aa)
     
  0.888
Bra036878
AT3G22950 (E=3e-098) ATARFC1 | ATARFC1 (ADP-ribosylation factor C1); GTP binding (183 aa)
     
  0.888
Bra036410
AT2G15310 (E=3e-095) ATARFB1A | ATARFB1A (ADP-ribosylation factor B1A); GTP binding (420 aa)
     
  0.888
Bra032602
AT1G02440 (E=2e-080) ATARFD1A | ATARFD1A (ADP-ribosylation factor D1A); GTP binding (190 aa)
     
  0.888
Bra032062.1-P
AT2G24765 (E=2e-094) ARF3, ARL1, ATARL1 | ARF3 (ADP-RIBOSYLATION FACTOR 3); protein binding ; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus (182 aa)
     
  0.888
Bra032015
AT3G03120 (E=1e-106) ATARFB1C | ATARFB1C (ADP-ribosylation factor B1C); GTP binding (192 aa)
     
  0.888
Bra027153
AT3G62290 (E=8e-102) ATARFA1E | ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding (181 aa)
     
  0.888
Bra024604
AT1G70490 (E=4e-101) ATARFA1D, ARFA1D | ARFA1D; GTP binding / phospholipase activator/ protein binding (181 aa)
     
  0.888
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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