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Bra005189 protein (Brassica rapa) - STRING interaction network
"Bra005189" - AT2G37510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005189AT2G37510 (E=5e-057) | RNA-binding protein, putative (144 aa)    
Predicted Functional Partners:
Bra037430
AT5G49210 (E=9e-054) | unknown protein (193 aa)
           
  0.604
Bra020657
AT5G49210 (E=9e-057) | unknown protein (197 aa)
           
  0.604
Bra033287
AT1G01080 (E=3e-093) | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (192 aa)
   
     
  0.535
Bra039789
AT2G37220 (E=2e-020) | 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative (120 aa)
   
     
  0.532
Bra024276
AT5G64200 (E=3e-057) ATSC35, SC35 | ATSC35; RNA binding / nucleic acid binding / nucleotide binding (280 aa)
   
          0.523
Bra017321
AT2G35410 (E=1e-100) | 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative (304 aa)
   
     
  0.521
Bra020076
AT5G19960 (E=9e-124) | RNA recognition motif (RRM)-containing protein (323 aa)
   
          0.519
Bra027446
AT1G47500 (E=1e-126) ATRBP47C’ | ATRBP47C’ (RNA-binding protein 47C’); RNA binding (320 aa)
   
     
  0.473
Bra018163
AT3G47120 (E=2e-091) | RNA recognition motif (RRM)-containing protein (293 aa)
   
          0.467
Bra011637
AT4G35785 (E=2e-039) | nucleic acid binding / nucleotide binding (222 aa)
   
          0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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