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Bra005190 protein (Brassica rapa) - STRING interaction network
"Bra005190" - AT2G37500 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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[Homology]
Score
Bra005190AT2G37500 (E=8e-231) | arginine biosynthesis protein ArgJ family ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate (466 aa)    
Predicted Functional Partners:
Bra035168
AT1G80600 (E=3e-206) WIN1 | WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine-2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (451 aa)
 
  0.991
Bra008453
AT1G80600 (E=1e-226) WIN1 | WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine-2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (448 aa)
 
  0.991
Bra014618
AT3G57560 (E=7e-138) | aspartate/glutamate/uridylate kinase family protein (344 aa)
 
  0.987
Bra007337
AT3G57560 (E=7e-162) | aspartate/glutamate/uridylate kinase family protein (343 aa)
 
  0.987
Bra011778
AT4G37670 (E=0.0) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (614 aa)
 
 
  0.984
Bra003758
AT1G75330 (E=2e-183) OTC | OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ ornithine carbamoyltransferase (377 aa)
 
 
  0.978
Bra017844
AT4G37670 (E=4e-129) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (569 aa)
 
 
  0.977
Bra008457
AT1G80600 (E=2e-104) WIN1 | WIN1 (HOPW1-1-INTERACTING 1); N2-acetyl-L-ornithine-2-oxoglutarate 5-aminotransferase/ catalytic/ pyridoxal phosphate binding / transaminase (489 aa)
 
  0.962
Bra013258
AT4G17830 (E=9e-228) | peptidase M20/M25/M40 family protein (432 aa)
         
  0.935
Bra012637
AT4G17830 (E=7e-228) | peptidase M20/M25/M40 family protein (437 aa)
         
  0.935
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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