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Bra005210 protein (Brassica rapa) - STRING interaction network
"Bra005210" - AT2G37260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005210AT2G37260 (E=8e-101) TTG2, ATWRKY44, WRKY44, DSL1 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor (409 aa)    
Predicted Functional Partners:
Bra029411
AT5G24520 (E=4e-038) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (120 aa)
       
 
  0.643
Bra029410
AT5G24520 (E=3e-011) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (102 aa)
       
 
  0.643
Bra026947
AT1G12910 (E=6e-201) ATAN11, LWD1 | ATAN11 (ANTHOCYANIN11); nucleotide binding (382 aa)
       
 
  0.643
Bra019798
AT1G12910 (E=1e-013) ATAN11, LWD1 | ATAN11 (ANTHOCYANIN11); nucleotide binding (67 aa)
       
 
  0.643
Bra009770
AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (337 aa)
       
 
  0.643
Bra012139
AT5G67180 (E=3e-134) TOE3 | AP2 domain-containing transcription factor, putative (360 aa)
       
      0.588
Bra011939
AT2G28550 (E=9e-179) RAP2.7, TOE1 | RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor (454 aa)
       
      0.588
Bra000487
AT2G28550 (E=2e-131) RAP2.7, TOE1 | RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor (417 aa)
       
      0.588
Bra037887
AT4G09820 (E=1e-114) TT8 | TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor (497 aa)
     
   
  0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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