STRINGSTRING
Bra005219 protein (Brassica rapa) - STRING interaction network
"Bra005219" - AT2G37080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005219AT2G37080 (E=2e-202) | myosin heavy chain-related (537 aa)    
Predicted Functional Partners:
Bra006863
AT5G56660 (E=1e-180) ILL2 | ILL2; IAA-Ala conjugate hydrolase/ IAA-amino acid conjugate hydrolase/ metallopeptidase (439 aa)
           
  0.472
Bra002800
AT5G56660 (E=2e-188) ILL2 | ILL2; IAA-Ala conjugate hydrolase/ IAA-amino acid conjugate hydrolase/ metallopeptidase (444 aa)
           
  0.472
Bra025777
AT1G19870 (E=5e-241) iqd32 | iqd32 (IQ-domain 32); calmodulin binding (744 aa)
           
  0.463
Bra016490
AT1G19870 (E=2e-191) iqd32 | iqd32 (IQ-domain 32); calmodulin binding (739 aa)
           
  0.463
Bra023955
AT4G32300 (E=0.0) SD2-5 | SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase (821 aa)
           
  0.461
Bra011009
AT1G26110 (E=8e-228) | unknown protein (597 aa)
           
  0.459
Bra038892
AT2G17800 (E=9e-097) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
       
      0.450
Bra036819
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
       
      0.450
Bra012858
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
       
      0.450
Bra003012
AT5G54140 (E=1e-189) ILL3 | ILL3; IAA-amino acid conjugate hydrolase/ metallopeptidase (428 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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