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Bra005230 protein (Brassica rapa) - STRING interaction network
"Bra005230" - AT2G36960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005230AT2G36960 (E=1e-213) TKI1 | TKI1 (TSL-kinase interacting protein 1); DNA binding / transcription factor (714 aa)    
Predicted Functional Partners:
Bra040510
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1345 aa)
     
      0.633
Bra020137
AT5G20930 (E=3e-305) TSL | TSL (TOUSLED); kinase/ protein serine/threonine kinase (684 aa)
       
 
  0.592
Bra002345
AT5G20930 (E=9e-274) TSL | TSL (TOUSLED); kinase/ protein serine/threonine kinase (673 aa)
       
 
  0.472
Bra006276
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1346 aa)
     
      0.460
Bra016241
AT1G70060 (E=0.0) SNL4 | SNL4 (SIN3-LIKE 4) (1289 aa)
       
      0.444
Bra003967
AT1G24190 (E=0.0) SIN3, ATSIN3, SNL3 | SNL3 (SIN3-LIKE 3); transcription repressor (1315 aa)
       
      0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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