STRINGSTRING
Bra005232 protein (Brassica rapa) - STRING interaction network
"Bra005232" - AT2G36930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005232AT2G36930 (E=3e-054) | zinc finger (C2H2 type) family protein (118 aa)    
Predicted Functional Partners:
Bra028734
AT5G06360 (E=8e-140) | ribosomal protein S8e family protein (260 aa)
     
 
  0.950
Bra009188
AT5G06360 (E=2e-139) | ribosomal protein S8e family protein (260 aa)
     
 
  0.950
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.935
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.935
Bra010982
AT1G25260 (E=2e-111) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.935
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.932
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.932
Bra019003
AT1G52980 (E=3e-247) | GTP-binding family protein (582 aa)
     
 
  0.924
Bra022611
AT5G52820 (E=3e-271) | WD-40 repeat family protein / notchless protein, putative (476 aa)
     
 
  0.913
Bra009201
AT5G52820 (E=6e-204) | WD-40 repeat family protein / notchless protein, putative (480 aa)
     
 
  0.913
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]