STRINGSTRING
Bra005235 protein (Brassica rapa) - STRING interaction network
"Bra005235" - AT2G36885 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005235AT2G36885 (E=7e-085) | unknown protein (251 aa)    
Predicted Functional Partners:
Bra036805
AT5G67370 (E=6e-154) | unknown protein (320 aa)
   
     
  0.661
Bra030810
AT1G56180 (E=2e-091) | unknown protein (409 aa)
   
          0.521
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.509
Bra040413
AT3G04890 (E=6e-088) | unknown protein (218 aa)
   
          0.464
Bra013761
AT4G24090 (E=1e-124) | unknown protein (314 aa)
   
        0.440
Bra027694
AT1G64355 (E=6e-078) | unknown protein (196 aa)
   
          0.439
Bra037525
AT5G47860 (E=2e-202) | unknown protein (431 aa)
   
          0.436
Bra000785
AT4G04020 (E=1e-129) FIB | FIB (FIBRILLIN); structural molecule (327 aa)
   
          0.427
Bra028418
AT5G38660 (E=2e-113) APE1 | APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (288 aa)
   
          0.423
Bra029481
AT4G04020 (E=7e-145) FIB | FIB (FIBRILLIN); structural molecule (318 aa)
   
          0.421
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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