STRINGSTRING
Bra005253 protein (Brassica rapa) - STRING interaction network
"Bra005253" - AT2G36680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005253AT2G36680 (E=1e-084) | LOCATED IN- ESCRT I complex; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Modifier of rudimentary, Modr (InterPro-IPR009851); BEST Arabidopsis thaliana protein match is- VPS37-1 (TAIR-AT3G53120.1); Has 348 Blast hits to 348 proteins in 85 species- Archae - 1; Bacteria - 4; Metazoa - 236; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 51 (source- NCBI BLink). (221 aa)    
Predicted Functional Partners:
Bra029546
AT4G05000 (E=9e-101) VPS28-2 | VPS28-2; transporter (209 aa)
       
  0.980
Bra023439
AT3G12400 (E=1e-142) ELC, ATELC | ELC; ubiquitin binding (398 aa)
     
  0.979
Bra017097
AT2G38830 (E=2e-111) | tumor susceptibility protein-related (328 aa)
     
  0.979
Bra001451
AT3G12400 (E=2e-085) ELC, ATELC | ELC; ubiquitin binding (384 aa)
     
  0.979
Bra020896
AT4G21560 (E=2e-094) VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (209 aa)
       
  0.977
Bra013536
AT4G21560 (E=1e-104) VPS28-1 | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1); transporter (209 aa)
       
  0.977
Bra040117
AT3G05040 (E=6e-212) HST, HST1 | HST (HASTY); nucleocytoplasmic transporter (1500 aa)
       
      0.900
Bra036934
AT1G43890 (E=1e-107) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (212 aa)
       
      0.897
Bra034924
AT1G43890 (E=1e-106) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (212 aa)
       
      0.897
Bra032196
AT1G43890 (E=2e-109) ATRAB18, RAB18-1, RABC1 | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding (213 aa)
       
      0.897
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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