STRINGSTRING
Bra005259 protein (Brassica rapa) - STRING interaction network
"Bra005259" - AT2G36610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005259AT2G36610 (E=8e-050) ATHB22 | ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22); DNA binding / transcription factor (187 aa)    
Predicted Functional Partners:
Bra030872
AT1G55270 (E=2e-244) | kelch repeat-containing F-box family protein (435 aa)
           
  0.478
Bra011908
AT1G55270 (E=4e-244) | kelch repeat-containing F-box family protein (435 aa)
           
  0.478
Bra000342
AT2G44130 (E=1e-156) | kelch repeat-containing F-box family protein (401 aa)
           
  0.478
Bra038821
AT2G18850 (E=2e-250) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SET (InterPro-IPR001214); BEST Arabidopsis thaliana protein match is- SET domain-containing protein (TAIR-AT3G07670.1); Has 597 Blast hits to 594 proteins in 119 species- Archae - 0; Bacteria - 0; Metazoa - 207; Fungi - 132; Plants - 162; Viruses - 0; Other Eukaryotes - 96 (source- NCBI BLink). (538 aa)
           
  0.473
Bra040484
AT2G46790 (E=2e-152) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (824 aa)
       
 
  0.456
Bra032491
AT1G04880 (E=9e-165) | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (440 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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