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Bra005264 protein (Brassica rapa) - STRING interaction network
"Bra005264" - AT2G36490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005264AT2G36490 (E=1e-260) DML1, ROS1 | DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (1400 aa)    
Predicted Functional Partners:
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
   
 
  0.955
Bra018061
AT3G48425 (E=6e-195) | endonuclease/exonuclease/phosphatase family protein (358 aa)
     
  0.949
Bra027296
AT3G14890 (E=3e-166) | phosphoesterase (602 aa)
       
 
  0.942
Bra001572
AT3G14890 (E=7e-126) | phosphoesterase (460 aa)
       
 
  0.938
Bra032088
AT2G24490 (E=2e-122) RPA2, ATRPA2, ROR1 | RPA2 (REPLICON PROTEIN A2); protein binding (273 aa)
     
 
  0.926
Bra027611
AT1G63020 (E=0.0) NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1443 aa)
   
 
  0.918
Bra019456
AT3G43920 (E=0.0) DCL3, ATDCL3 | ribonuclease III family protein (1447 aa)
   
 
  0.916
Bra016932
AT2G41460 (E=2e-153) ARP | ARP; DNA-(apurinic or apyrimidinic site) lyase (482 aa)
     
  0.870
Bra011657
AT4G36050 (E=1e-207) | endonuclease/exonuclease/phosphatase family protein (558 aa)
     
  0.870
Bra033710
AT5G43990 (E=1e-158) SUVR2, SDG18 | SUVR2; histone-lysine N-methyltransferase/ zinc ion binding (750 aa)
       
 
  0.835
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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