STRINGSTRING
Bra005272 protein (Brassica rapa) - STRING interaction network
"Bra005272" - AT2G36360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005272AT2G36360 (E=5e-120) | kelch repeat-containing protein (576 aa)    
Predicted Functional Partners:
Bra022323
AT3G18470 (E=8e-058) | unknown protein (161 aa)
           
  0.666
Bra020408
AT5G57860 (E=2e-033) | ubiquitin family protein (152 aa)
       
 
  0.616
Bra006794
AT5G57860 (E=3e-041) | ubiquitin family protein (93 aa)
       
 
  0.616
Bra006730
AT5G59140 (E=1e-050) | SKP1 family protein (96 aa)
       
      0.612
Bra002588
AT5G59140 (E=5e-050) | SKP1 family protein (96 aa)
       
      0.612
Bra037195
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1264 aa)
     
 
  0.563
Bra031801
AT5G65930 (E=0.0) ZWI, PKCBP, KCBP | ZWI (ZWICHEL); calmodulin binding / microtubule motor (1281 aa)
     
 
  0.563
Bra038548
AT2G18700 (E=0.0) ATTPS11, TPS11, ATTPSB | ATTPS11; transferase, transferring glycosyl groups (864 aa)
     
      0.561
Bra035049
AT1G78580 (E=0.0) ATTPS1, TPS1 | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (950 aa)
     
      0.561
Bra031526
AT1G60140 (E=0.0) ATTPS10, TPS10 | ATTPS10 (trehalose phosphate synthase); transferase, transferring glycosyl groups / trehalose-phosphatase (857 aa)
     
      0.561
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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