STRINGSTRING
Bra005284 protein (Brassica rapa) - STRING interaction network
"Bra005284" - AT3G52770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005284AT3G52770 (E=6e-008) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (71 aa)    
Predicted Functional Partners:
Bra002458
AT5G60690 (E=0.0) REV, IFL, IFL1 | REV (REVOLUTA); DNA binding / lipid binding / transcription factor (850 aa)
     
 
  0.581
Bra032394
AT1G30490 (E=0.0) PHV, ATHB9 | PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor (840 aa)
       
 
  0.549
Bra003431
AT3G60890 (E=5e-038) ZPR2 | ZPR2 (LITTLE ZIPPER 2); protein binding (103 aa)
           
  0.497
Bra014464
AT3G60890 (E=2e-012) ZPR2 | ZPR2 (LITTLE ZIPPER 2); protein binding (93 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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