STRINGSTRING
Bra005285 protein (Brassica rapa) - STRING interaction network
"Bra005285" - AT2G36300 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005285AT2G36300 (E=2e-089) | integral membrane Yip1 family protein (256 aa)    
Predicted Functional Partners:
Bra040644
AT3G05280 (E=1e-146) | integral membrane Yip1 family protein (282 aa)
     
 
  0.945
Bra039447
AT3G05280 (E=6e-145) | integral membrane Yip1 family protein (283 aa)
     
 
  0.945
Bra017050
AT2G39805 (E=3e-141) | integral membrane Yip1 family protein (276 aa)
     
 
  0.945
Bra001143
AT3G05280 (E=8e-149) | integral membrane Yip1 family protein (282 aa)
     
 
  0.945
Bra000151
AT2G39805 (E=3e-143) | integral membrane Yip1 family protein (276 aa)
     
 
  0.945
Bra039874
AT1G30890 (E=3e-128) | integral membrane HRF1 family protein (265 aa)
     
 
  0.817
Bra014538
AT3G59500 (E=9e-145) | integral membrane HRF1 family protein (266 aa)
     
 
  0.817
Bra007455
AT3G59500 (E=1e-032) | integral membrane HRF1 family protein (186 aa)
     
 
  0.817
Bra003379
AT3G59500 (E=1e-143) | integral membrane HRF1 family protein (272 aa)
     
 
  0.817
Bra024090
AT2G18840 (E=4e-041) | integral membrane Yip1 family protein (183 aa)
       
 
  0.773
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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