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Bra005290 protein (Brassica rapa) - STRING interaction network
"Bra005290" - AT2G36230 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005290AT2G36230 (E=3e-145) APG10, HISN3 | APG10 (ALBINO AND PALE GREEN 10); 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazo le-4-carboxamide isomerase (316 aa)    
Predicted Functional Partners:
Bra028243
AT4G26900 (E=1e-277) AT-HF, HISN4 | AT-HF (HIS HF); imidazoleglycerol-phosphate synthase (585 aa)
 
 
  0.998
Bra026393
AT4G26900 (E=2e-166) AT-HF, HISN4 | AT-HF (HIS HF); imidazoleglycerol-phosphate synthase (581 aa)
 
 
  0.997
Bra033871
AT1G31860 (E=2e-133) AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase (281 aa)
   
 
  0.979
Bra023217
AT1G31860 (E=9e-122) AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase (284 aa)
   
 
  0.979
Bra035662
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (899 aa)
   
 
  0.968
Bra011921
AT2G28880 (E=0.0) emb1997 | emb1997 (embryo defective 1997); anthranilate synthase/ catalytic/ oxo-acid-lyase (937 aa)
   
 
  0.968
Bra037757
AT5G63890 (E=6e-231) ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE); histidinol dehydrogenase ; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (464 aa)
   
 
  0.892
Bra024245
AT5G63890 (E=1e-225) ATHDH | ATHDH (HISTIDINOL DEHYDROGENASE); histidinol dehydrogenase ; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (469 aa)
   
 
  0.892
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
   
 
  0.809
Bra035466
AT1G58080 (E=2e-190) ATATP-PRT1, HISN1A | ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (407 aa)
   
 
  0.802
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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