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Bra005301 protein (Brassica rapa) - STRING interaction network
"Bra005301" - AT2G36080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005301AT2G36080 (E=1e-091) | DNA-binding protein, putative (248 aa)    
Predicted Functional Partners:
Bra035324
AT5G42700 (E=1e-054) | transcriptional factor B3 family protein (225 aa)
           
  0.426
Bra035129
AT3G19184 (E=1e-083) | DNA binding (261 aa)
           
  0.426
Bra030195
AT4G15400 (E=7e-149) | transferase family protein (429 aa)
           
  0.418
Bra030190
AT4G15400 (E=4e-132) | transferase family protein (435 aa)
           
  0.418
Bra012121
AT5G66980 (E=5e-101) | transcriptional factor B3 family protein (327 aa)
           
  0.408
Bra029822
AT3G10200 (E=3e-298) | dehydration-responsive protein-related (584 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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