STRINGSTRING
Bra005304 protein (Brassica rapa) - STRING interaction network
"Bra005304" - AT2G36020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005304AT2G36020 (E=1e-101) HVA22J | HVA22J (HVA22-LIKE PROTEIN J) (255 aa)    
Predicted Functional Partners:
Bra027391
AT3G13870 (E=8e-202) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding (770 aa)
       
 
  0.517
Bra025089
AT5G45160 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (831 aa)
       
 
  0.517
Bra016026
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1141 aa)
       
 
  0.517
Bra003863
AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein ; Probable GTP-binding protein that may be involved in cell development (1200 aa)
       
 
  0.517
Bra001525
AT3G13870 (E=0.0) RHD3 | RHD3 (ROOT HAIR DEFECTIVE 3); GTP binding ; Probable GTP-binding protein that may be involved in cell development (805 aa)
       
 
  0.517
Bra012495
AT1G24650 (E=2e-315) | leucine-rich repeat family protein / protein kinase family protein (889 aa)
       
 
  0.516
Bra021838
AT2G33270 (E=4e-109) ACHT3 | ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (272 aa)
     
   
  0.511
Bra038907
AT3G51590 (E=3e-052) LTP12 | LTP12 (LIPID TRANSFER PROTEIN 12); lipid binding (119 aa)
           
  0.510
Bra034654
AT4G34780 (E=3e-040) | auxin-responsive family protein (106 aa)
           
  0.510
Bra024678
AT1G26850 (E=0.0) | dehydration-responsive family protein (614 aa)
           
  0.510
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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