STRINGSTRING
Bra005317 protein (Brassica rapa) - STRING interaction network
"Bra005317" - AT2G30900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005317AT2G30900 (E=1e-176) | unknown protein (364 aa)    
Predicted Functional Partners:
Bra009353
AT5G08580 (E=1e-189) | calcium-binding EF hand family protein (379 aa)
           
  0.475
Bra006009
AT5G08580 (E=3e-164) | calcium-binding EF hand family protein (383 aa)
           
  0.475
Bra023543
AT5G01150 (E=9e-159) | unknown protein (519 aa)
           
  0.473
Bra023094
AT2G37050 (E=0.0) | kinase (933 aa)
           
  0.408
Bra005833
AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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