STRINGSTRING
Bra005327 protein (Brassica rapa) - STRING interaction network
"Bra005327" - AT2G35585 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005327AT2G35585 (E=2e-057) | unknown protein (154 aa)    
Predicted Functional Partners:
Bra035517
AT1G32050 (E=2e-137) | secretory carrier membrane protein (SCAMP) family protein (298 aa)
           
  0.507
Bra005329
AT1G32050 (E=4e-123) | secretory carrier membrane protein (SCAMP) family protein (292 aa)
           
  0.507
Bra009857
AT5G25760 (E=3e-087) PEX4, UBC21 | PEX4 (PEROXIN4); protein binding / ubiquitin-protein ligase (163 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]