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Bra005335 protein (Brassica rapa) - STRING interaction network
"Bra005335" - AT2G35530 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005335AT2G35530 (E=3e-149) | bZIP transcription factor family protein (422 aa)    
Predicted Functional Partners:
Bra010572
AT4G36730 (E=6e-141) GBF1 | GBF1; sequence-specific DNA binding / transcription factor (313 aa)
       
 
0.621
Bra023243
AT1G32150 (E=2e-070) | bZIP transcription factor family protein (352 aa)
       
 
0.620
Bra011701
AT4G36730 (E=3e-135) GBF1 | GBF1; sequence-specific DNA binding / transcription factor (313 aa)
       
 
0.619
Bra037382
AT4G01120 (E=2e-108) GBF2, ATBZIP54 | GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor (367 aa)
       
 
0.618
Bra004550
AT2G46270 (E=5e-143) GBF3 | GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor (379 aa)
       
 
0.615
Bra024528
AT1G22660 (E=9e-264) | tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative (601 aa)
     
   
  0.415
Bra009695
AT5G23570 (E=2e-213) SGS3, ATSGS3 | SGS3 (SUPPRESSOR OF GENE SILENCING 3) (606 aa)
     
   
  0.408
Bra036322
AT4G01600 (E=9e-097) | GRAM domain-containing protein / ABA-responsive protein-related (226 aa)
           
  0.406
Bra012338
AT1G22660 (E=1e-254) | tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative (601 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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