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Bra005340 protein (Brassica rapa) - STRING interaction network
"Bra005340" - AT2G35460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005340AT2G35460 (E=8e-096) | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (233 aa)    
Predicted Functional Partners:
Bra032407
AT1G30600 (E=0.0) | subtilase family protein (836 aa)
           
  0.477
Bra020942.1-P
AT4G19940 (E=4e-112) | F-box family protein (396 aa)
           
  0.477
Bra012529
AT4G19930 (E=5e-107) | F-box family protein (438 aa)
           
  0.477
Bra012527
AT4G19930 (E=5e-079) | F-box family protein (319 aa)
           
  0.477
Bra005443
AT2G34220 (E=4e-210) MEE20 | MEE20 (maternal effect embryo arrest 20) (745 aa)
           
  0.477
Bra005609
AT2G32150 (E=5e-126) | haloacid dehalogenase-like hydrolase family protein (261 aa)
           
  0.468
Bra020393
AT5G58070 (E=9e-099) ATTIL, TIL | TIL (TEMPERATURE-INDUCED LIPOCALIN); binding / transporter (187 aa)
           
  0.467
Bra006784
AT5G58070 (E=4e-097) ATTIL, TIL | TIL (TEMPERATURE-INDUCED LIPOCALIN); binding / transporter (187 aa)
           
  0.467
Bra033740
AT5G44360 (E=3e-261) | FAD-binding domain-containing protein (547 aa)
           
  0.465
Bra002916
AT1G28710 (E=7e-143) | unknown protein (340 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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