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Bra005344 protein (Brassica rapa) - STRING interaction network
"Bra005344" - AT2G35390 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005344AT2G35390 (E=2e-194) | ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) (399 aa)    
Predicted Functional Partners:
Bra014814
AT3G54470 (E=7e-216) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (474 aa)
   
 
  0.953
Bra003186
AT3G54470 (E=9e-235) | uridine 5’-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (469 aa)
   
 
  0.953
Bra011558
AT4G34740 (E=2e-280) ATASE2, CIA1, ATPURF2 | ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase (555 aa)
   
  0.927
Bra001980
AT2G16570 (E=9e-271) ATASE, ATASE1 | ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1); amidophosphoribosyltransferase (557 aa)
   
  0.927
Bra040406
AT3G04790 (E=2e-127) | ribose 5-phosphate isomerase-related (276 aa)
   
 
  0.924
Bra040120
AT3G04790 (E=8e-114) | ribose 5-phosphate isomerase-related (275 aa)
   
 
  0.924
Bra033747
AT5G44520 (E=1e-124) | ribose 5-phosphate isomerase-related (283 aa)
   
 
  0.924
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
     
 
  0.919
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
     
 
  0.919
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
     
 
  0.919
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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