STRINGSTRING
Bra005355 protein (Brassica rapa) - STRING interaction network
"Bra005355" - AT2G35270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005355AT2G35270 (E=1e-101) | DNA-binding protein-related (284 aa)    
Predicted Functional Partners:
Bra033668
AT5G43250 (E=7e-049) NF-YC13 | NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13); DNA binding / transcription factor (130 aa)
           
  0.463
Bra002336
AT5G20885 (E=6e-069) | zinc finger (C3HC4-type RING finger) family protein (173 aa)
           
  0.463
Bra033059
AT3G28780 (E=4e-065) | unknown protein (694 aa)
           
  0.459
Bra025443
AT5G37478 (E=9e-046) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Targeting for Xklp2 (InterPro-IPR009675); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G15510.1); Has 39 Blast hits to 39 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (100 aa)
           
  0.456
Bra009663
AT5G66070 (E=9e-094) | zinc finger (C3HC4-type RING finger) family protein (223 aa)
           
  0.454
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]