STRINGSTRING
Bra005356 protein (Brassica rapa) - STRING interaction network
"Bra005356" - AT2G35260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005356AT2G35260 (E=1e-170) | unknown protein (374 aa)    
Predicted Functional Partners:
Bra011319
AT4G32060 (E=6e-221) | calcium-binding EF hand family protein (494 aa)
           
  0.605
Bra007149
AT3G55240 (E=8e-040) | Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype. (95 aa)
           
  0.605
Bra014195
AT1G49500 (E=1e-022) | unknown protein (63 aa)
           
  0.583
Bra004633
AT2G41640 (E=1e-239) | transferase, transferring glycosyl groups (486 aa)
           
  0.505
Bra015802
AT1G75900 (E=2e-165) | family II extracellular lipase 3 (EXL3) (362 aa)
           
  0.478
Bra005609
AT2G32150 (E=5e-126) | haloacid dehalogenase-like hydrolase family protein (261 aa)
           
  0.478
Bra024446
AT5G67480 (E=3e-174) BT4 | BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator (380 aa)
           
  0.477
Bra014401
AT3G62550 (E=5e-082) | universal stress protein (USP) family protein (163 aa)
           
  0.476
Bra007683
AT3G62550 (E=4e-083) | universal stress protein (USP) family protein (163 aa)
           
  0.476
Bra015803
AT1G75890 (E=1e-159) | family II extracellular lipase 2 (EXL2) (346 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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