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Bra005358 protein (Brassica rapa) - STRING interaction network
"Bra005358" - AT2G35230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005358AT2G35230 (E=6e-101) | VQ motif-containing protein (394 aa)    
Predicted Functional Partners:
Bra038228
AT3G19700 (E=2e-289) IKU2 | IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (970 aa)
           
  0.604
Bra030847
AT1G55600 (E=2e-049) WRKY10, ATWRKY10, MINI3 | WRKY10 (WRKY DNA-BINDING PROTEIN 10); transcription factor (447 aa)
           
  0.602
Bra023112
AT2G37260 (E=2e-182) TTG2, ATWRKY44, WRKY44, DSL1 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor (420 aa)
           
  0.418
Bra010468
AT4G25350 (E=0.0) SHB1 | SHB1 (SHORT HYPOCOTYL UNDER BLUE1) (730 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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