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Bra005361 protein (Brassica rapa) - STRING interaction network
"Bra005361" - AT2G35190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005361AT2G35190 (E=3e-127) NPSN11, ATNPSN11, NSPN11 | NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter (264 aa)    
Predicted Functional Partners:
Bra040067
AT4G32150 (E=5e-110) VAMP711, ATVAMP711 | ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711) (219 aa)
     
 
  0.448
Bra038066
AT4G15780 (E=2e-060) ATVAMP724, VAMP724 | ATVAMP724 (202 aa)
     
 
  0.448
Bra033511
AT4G15780 (E=9e-110) ATVAMP724, VAMP724 | ATVAMP724 (222 aa)
     
 
  0.448
Bra032493
AT1G04750 (E=2e-108) VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) (220 aa)
     
 
  0.448
Bra030588
AT1G04750 (E=8e-108) VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) (219 aa)
     
 
  0.448
Bra022926
AT2G33120 (E=1e-111) SAR1, VAMP722, ATVAMP722 | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (222 aa)
     
 
  0.448
Bra022893
AT2G32670 (E=1e-107) ATVAMP725, VAMP725 | ATVAMP725 (220 aa)
     
 
  0.448
Bra021828
AT2G33120 (E=1e-099) SAR1, VAMP722, ATVAMP722 | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (219 aa)
     
 
  0.448
Bra021804
AT2G32670 (E=8e-106) ATVAMP725, VAMP725 | ATVAMP725 (220 aa)
     
 
  0.448
Bra020187
AT5G22360 (E=2e-117) ATVAMP714, VAMP714 | ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) (221 aa)
     
 
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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