STRINGSTRING
Bra005370 protein (Brassica rapa) - STRING interaction network
"Bra005370" - AT2G35060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005370AT2G35060 (E=0.0) KUP11 | KUP11; potassium ion transmembrane transporter ; Potassium transporter (787 aa)    
Predicted Functional Partners:
Bra006948
AT3G52780 (E=3e-216) ATPAP20, PAP20 | PAP20; acid phosphatase/ protein serine/threonine phosphatase (426 aa)
   
   
  0.501
Bra033232
AT4G00630 (E=0.0) KEA2, ATKEA2 | KEA2; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1118 aa)
           
  0.497
Bra033231
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1120 aa)
           
  0.497
Bra032651
AT1G01790 (E=0.0) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (1157 aa)
           
  0.497
Bra032572
AT1G01790 (E=2e-179) KEA1, ATKEA1 | KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium-hydrogen antiporter (771 aa)
           
  0.497
Bra029519
AT4G04850 (E=1e-247) KEA3, ATKEA3 | KEA3; potassium ion transmembrane transporter/ potassium-hydrogen antiporter (819 aa)
           
  0.497
Bra039650
AT1G49950 (E=1e-104) TRB1, ATTRB1 | DNA-binding protein, putative (310 aa)
       
      0.493
Bra037839
AT5G67580 (E=1e-083) TRB2, ATTRB2, TBP3, ATTBP3 | TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (294 aa)
       
      0.493
Bra024438
AT5G67580 (E=1e-096) TRB2, ATTRB2, TBP3, ATTBP3 | TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor (287 aa)
       
      0.493
Bra018818
AT1G49950 (E=2e-111) TRB1, ATTRB1 | DNA-binding protein, putative (351 aa)
       
      0.493
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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